Constructor for Track

Usage

Track(
  trackType = c("annotation", "quantitative", "alignment", "variant"),
  sourceType = c("file", "gcs", "ga4gh"),
  fileFormat = c("bed", "gff", "gff3", "gtf", "wig", "bigWig", "bedGraph", "bam", "vcf",
    "seg"),
  trackName,
  onScreenOrder,
  color,
  height,
  autoTrackHeight,
  minTrackHeight,
  maxTrackHeight,
  visibilityWindow
)

Arguments

trackType: One of "annotation", "quantitative", "variant".
sourceType: Only "file" is currently supported.
fileFormat: One of "bed", "bedGraph", "vcf"
trackName: A character string, used as track label by igv, we recommend unique names per track.
onScreenOrder: Numeric, for explicit placement of track within the current set.
color: A CSS color name (e.g., "red" or "#FF0000")
height: track height, typically in range 20 (for annotations) and up to 1000 (for large sample vcf files)
autoTrackHeight: If true, then track height is adjusted dynamically, within the bounds set by minHeight and maxHeight, to accomdodate features in view
minTrackHeight: In pixels, minimum allowed
maxTrackHeight: In pixels, maximum allowed
visibilityWindow: Maximum window size in base pairs for which indexed annotations or variants are displayed. Defaults: 1 MB for variants, whole chromosome for other track types.

Value

An object of class Track

References

https://github.com/igvteam/igv.js/wiki/Tracks

https://www.w3schools.com/cssref/css_colors.asp