Constructor for RemoteAlignmentTrack — RemoteAlignmentTrack-class • igvR

RemoteAlignmentTrack creates an IGV track for remote bam files

Usage

RemoteAlignmentTrack(
  trackName,
  bamUrl,
  bamIndex = NULL,
  trackHeight = 50,
  visibilityWindow = 30000,
  color = "gray"
)

trackName: A character string, used as track label by igv, we recommend unique names per track.
bamUrl: The URL of a bam file
bamIndex: The URL of a bam index file. Defaults to <bamUrl>.bai
trackHeight: track height, typically in range 20 (for annotations) and up to 1000 (for large sample vcf files)
visibilityWindow: Maximum window size in base pairs for which indexed annotations or variants are displayed. Defaults: 1 MB for variants, whole chromosome for other track types.
color: A character string, either a reconized color ("red") or a hex string ("#FF8532")

A RemoteAlignmentTrack object

Detailed description goes here