This function is called in the server function of your shiny app
Usage
igvShiny(
genomeOptions,
width = NULL,
height = NULL,
elementId = NULL,
displayMode = "squished",
tracks = list()
)Arguments
- genomeOptions
a list with these fields: genomeName, initialLocus, annotation, dataMode, fasta, fastaIndex, stockGenome, validated
- width
a character string, standard css notations, either e.g., "1000px" or "95%"
- height
a character string, needs to be an explicit pixel measure, e.g., "800px"
- elementId
a character string, the html element id within which igv is created
- displayMode
a character string, default "SQUISHED".
- tracks
a list of track specifications to be created and displayed at startup
Examples
library(igvShiny)
demo_app_file <-
system.file(package = "igvShiny", "demos", "igvShinyDemo.R")
if (interactive()) {
shiny::runApp(demo_app_file)
}